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Capsule
Your compute
capsule's
DOI
Every published
capsule
has a DOI… Are DOIs assigned at the
capsule
level or the level of individual files?… If I update my
capsule
, will it get a new DOI?
Written by
Shahar Zaks
Updated over a week ago
Publishing on Code Ocean: an overview
The
capsule
submission and publication process… When you are ready for your compute
capsule
to be publicly available, you will: commit changes… From here, your
capsule
will be verified for computational reproducibility
Written by
Shahar Zaks
Updated over a week ago
Duplicating a compute
capsule
To duplicate a compute
capsule
, select Duplicate from the
Capsule
menu… Duplicating a compute
capsule
allows you to create a copy of it while keeping the original unchanged… A copy of the
capsule
will open and be automatically added to your dashboard
Written by
Shahar Zaks
Updated over a week ago
Discarding a Git commit
To restore your
capsule
to its previous state… After making changes, you'll see a Git commit window in the
capsule's
Timeline: You can click the
Written by
Shahar Zaks
Updated over a week ago
Your published
capsule
: an overview
Your
capsule's
DOI, URL, and public availability… Your
capsule
: has a DOI and both general and BibTex citations -- all available in your capsule's… prefix https://codeocean.com, a unique identifier, and a version signifier, e.g., https://codeocean.com/
capsule
Written by
Shahar Zaks
Updated over a week ago
What is a compute
capsule
?
A compute
capsule
is the key to enabling guaranteed computational reproducibility on Code Ocean… To upload code to Code Ocean, a compute
capsule
needs to be created to store not only the code, but everything… At the core of the compute
capsule
is a Docker image and Dockerfile, which contains the necessary infrastructural
Written by
Shahar Zaks
Updated over a week ago
Git clone your
capsule
to your computer
Click the
Capsule
menu and select Clone via Git: This will provide you with the appropriate Git repository… From that point, you can push, pull, etc. to the corresponding Code Ocean
capsule
Written by
Shahar Zaks
Updated over a week ago
Sharing a published compute
capsule
Sharing a published compute
capsule
is easy… You can embed a
capsule
widget into a webpage: Click Share Click Embed Copy the HTML
Written by
Shahar Zaks
Updated over a week ago
Template
capsule
: Minimal papaja example
Capsule
: https://codeocean.com/
capsule
/8183533/tree/v1 Two sentence overview: This
capsule
demonstrates… Intended use case: You can duplicate this
capsule
, add any further R packages you need, and replace the
Written by
Shahar Zaks
Updated over a week ago
Saving dependencies installed during (Cloud Workstation) runtime
How to record your dependencies and transfer it to your
capsule
… files in /code and /data while in a Cloud Workstation session will be automatically synced back to the
capsule
… Cloud Workstation session and re-add them to your environment once you're back in the non-interactive
capsule
Written by
Shahar Zaks
Updated over a week ago