Advice and answers from the Code Ocean Team

Search results for:Capsule

Duplicating a compute capsule

To duplicate a compute capsule, select Duplicate from the Capsule menu… Duplicating a compute capsule allows you to create a copy of it while keeping the original unchanged… A copy of the capsule will open and be automatically added to your dashboard

Template capsule: Minimal papaja example

Capsule: https://codeocean.com/capsule/8183533/tree/v1 Two sentence overview: This capsule demonstrates… Intended use case: You can duplicate this capsule, add any further R packages you need, and replace the

Your published capsule: an overview

Your capsule's DOI, URL, and public availability… Your capsule: has a DOI and both general and BibTex citations -- all available in your capsule's… prefix https://codeocean.com, a unique identifier, and a version signifier, e.g., https://codeocean.com/capsule

Your compute capsule's DOI

Every published capsule has a DOI… Are DOIs assigned at the capsule level or the level of individual files?… If I update my capsule, will it get a new DOI?

Syncing your capsule with an outside git repository

While you can create a capsule by importing an existing git repository from GitHub, GitLab, or other

Publishing on Code Ocean: an overview

The capsule submission and publication process… When you are ready for your compute capsule to be publicly available, you will: commit changes… From here, your capsule will be verified for computational reproducibility

Sharing a published compute capsule

Sharing a published compute capsule is easy… You can embed a capsule widget into a webpage: Click Share Click Embed Copy the HTML

Git clone your capsule to your computer

Click the Capsule menu and select Clone via Git: This will provide you with the appropriate Git repository… From that point, you can push, pull, etc. to the corresponding Code Ocean capsule

Discarding a Git commit

To restore your capsule to its previous state… After making changes, you'll see a Git commit window in the capsule's Timeline: You can click the

What is a compute capsule?

A compute capsule is the key to enabling guaranteed computational reproducibility on Code Ocean… To upload code to Code Ocean, a compute capsule needs to be created to store not only the code, but everything… At the core of the compute capsule is a Docker image and Dockerfile, which contains the necessary infrastructural