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User Manual
User Manual
In-depth operating instructions for Code Ocean's features.
16 articles in this collection
Written by
Shahar Zaks
Your dashboard
Written by
Shahar Zaks
Updated over a week ago
Capsule setup
Creating a capsule in a language without a pre-existing starter environment
Select 'Ubuntu Linux 18.04' from the 'Starter Environments' in the 'Environment' tab to configure your base environment through 'apt-get'.
Written by
Shahar Zaks
Updated over a week ago
Creating an App Panel
Using command-line options to provide users point-and-click input.
Written by
Shahar Zaks
Updated over a week ago
Duplicating a compute capsule
How to create a private copy of either published or unpublished code.
Written by
Shahar Zaks
Updated over a week ago
Sharing Capsules
Letting others view or edit your unpublished code.
Written by
Shahar Zaks
Updated over a week ago
.sh (re: shell) scripts on Code Ocean
These are shell scripts, arguably the most elegant and powerful way to run and chain your analyses together.
Written by
Shahar Zaks
Updated over a week ago
GPU support
Select a base environment with CUDA and/or a deep learning framework installed and begin.
Written by
Shahar Zaks
Updated over a week ago
Uploading a cover image
For discovery and intelligibility on Code Ocean's Explore page
Written by
Shahar Zaks
Updated over a week ago
Installing additional Jupyter kernels
Python, R, Julia, and Stata kernels on Code Ocean.
Written by
Shahar Zaks
Updated over a week ago
Reproducible code execution
How to write (and set) a run script
Running your code from top to bottom by default
Written by
Shahar Zaks
Updated over a week ago
Running your code headlessly
A primer on what will and will not run on Code Ocean
Written by
Shahar Zaks
Updated over a week ago
Advanced environment configuration
Advanced installer configuration in the package management system
Adding Conda channels and APT PPAs, or configuring the CRAN mirror
Written by
Shahar Zaks
Updated over a week ago
Using MRAN snapshots to install archived R packages
How to match your computational environment to the R packages available in a prior time
Written by
Shahar Zaks
Updated over a week ago
Installing R packages through postInstall
A few notes on flags and parameters you may need to add
Written by
Shahar Zaks
Updated over a week ago
Sharing and finding published capsules
Exploring and modifying published code
Using Code Ocean's Explore page to check out published capsules.
Written by
Shahar Zaks
Updated over a week ago
Exporting capsules and reproducing results on your local machine
Steps for running code as you find it on Code Ocean locally.
Written by
Shahar Zaks
Updated over a week ago