User Manual

In-depth operating instructions for Code Ocean's features.

15 articles in this collection
Written by Shahar Zaks

Your dashboard

Written by Shahar Zaks
Updated over a week ago

Capsule setup

Creating a capsule in a language without a pre-existing starter environment

Select 'Ubuntu Linux 18.04' from the 'Starter Environments' in the 'Environment' tab to configure your base environment through 'apt-get'.

Written by Shahar Zaks
Updated over a week ago

Duplicating a compute capsule

How to create a private copy of either published or unpublished code.

Written by Shahar Zaks
Updated over a week ago

Collaboration

Letting others view or edit your unpublished code.

Written by Shahar Zaks
Updated over a week ago

.sh (re: shell) scripts on Code Ocean

These are shell scripts, arguably the most elegant and powerful way to run and chain your analyses together.

Written by Shahar Zaks
Updated over a week ago

GPU support

Select a base environment with CUDA and/or a deep learning framework installed and begin.

Written by Shahar Zaks
Updated over a week ago

Uploading a cover image

For discovery and intelligibility on Code Ocean's Explore page

Written by Shahar Zaks
Updated over a week ago

Installing additional Jupyter kernels

Python, R, Julia, and Stata kernels on Code Ocean.

Written by Shahar Zaks
Updated over a week ago

Reproducible code execution

How to write (and set) a run script

Running your code from top to bottom by default

Written by Shahar Zaks
Updated over a week ago

Running your code headlessly

A primer on what will and will not run on Code Ocean

Written by Shahar Zaks
Updated over a week ago

Advanced environment configuration

Advanced installer configuration in the package management system

Adding Conda channels and APT PPAs, or configuring the CRAN mirror

Written by Shahar Zaks
Updated over a week ago

Using MRAN snapshots to install archived R packages

How to match your computational environment to the R packages available in a prior time

Written by Shahar Zaks
Updated over a week ago

Installing R packages through postInstall

A few notes on flags and parameters you may need to add

Written by Shahar Zaks
Updated over a week ago

Exploring and modifying published code

Using Code Ocean's Explore page to check out published capsules.

Written by Shahar Zaks
Updated over a week ago

Exporting capsules and reproducing results on your local machine

Steps for running code as you find it on Code Ocean locally.

Written by Shahar Zaks
Updated over a week ago