Code Ocean

Code + (optional) data + computational environment = the minimum required for computational reproducibility.

What is a compute capsule?

Covering: 1) what is a compute capsule 2) uploading code and data 3) configuring your environment, 4) publishing on Code Ocean.

/code, /data, /results, and symbolic links.

Files must be saved to the /results folder.

Take advantage of  preloaded public datasets, or upload your own.

Pipelines, analyses, visualizations, and statistical checks are all great fits for publishing on Code Ocean.

Choose from among a curated collection of runtime environments covering common languages and frameworks.

Install any libraries, packages, or dependencies your code needs in order to run.

Download, extract, compile – use the full set of tools available on Linux to set up your runtime environment.

The "buildLog" result file contains the console output from package installation commands and postInstall execution.

How to use the package management system and postInstall script to install languages, interpreters, and compilers.

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